Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rmet_2288 | Rmet_2291 | Rmet_2288 | Rmet_2291 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.594 |
Rmet_2288 | Rmet_2292 | Rmet_2288 | Rmet_2292 | Conserved hypothetical protein. | Putative regulator. | 0.501 |
Rmet_2288 | Rmet_2293 | Rmet_2288 | Rmet_2293 | Conserved hypothetical protein. | Putative regulator. | 0.478 |
Rmet_2288 | Rmet_2294 | Rmet_2288 | Rmet_2294 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.476 |
Rmet_2288 | alpA | Rmet_2288 | Rmet_2289 | Conserved hypothetical protein. | DNA-binding transcriptional activator. | 0.571 |
Rmet_2288 | soj | Rmet_2288 | Rmet_2290 | Conserved hypothetical protein. | ATPase involved in plasmid partitioning Soj. | 0.492 |
Rmet_2291 | Rmet_2288 | Rmet_2291 | Rmet_2288 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.594 |
Rmet_2291 | Rmet_2292 | Rmet_2291 | Rmet_2292 | Conserved hypothetical protein. | Putative regulator. | 0.805 |
Rmet_2291 | Rmet_2293 | Rmet_2291 | Rmet_2293 | Conserved hypothetical protein. | Putative regulator. | 0.769 |
Rmet_2291 | Rmet_2294 | Rmet_2291 | Rmet_2294 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.768 |
Rmet_2291 | alpA | Rmet_2291 | Rmet_2289 | Conserved hypothetical protein. | DNA-binding transcriptional activator. | 0.686 |
Rmet_2291 | soj | Rmet_2291 | Rmet_2290 | Conserved hypothetical protein. | ATPase involved in plasmid partitioning Soj. | 0.801 |
Rmet_2292 | Rmet_2288 | Rmet_2292 | Rmet_2288 | Putative regulator. | Conserved hypothetical protein. | 0.501 |
Rmet_2292 | Rmet_2291 | Rmet_2292 | Rmet_2291 | Putative regulator. | Conserved hypothetical protein. | 0.805 |
Rmet_2292 | Rmet_2293 | Rmet_2292 | Rmet_2293 | Putative regulator. | Putative regulator. | 0.945 |
Rmet_2292 | Rmet_2294 | Rmet_2292 | Rmet_2294 | Putative regulator. | Conserved hypothetical protein. | 0.945 |
Rmet_2292 | alpA | Rmet_2292 | Rmet_2289 | Putative regulator. | DNA-binding transcriptional activator. | 0.915 |
Rmet_2292 | soj | Rmet_2292 | Rmet_2290 | Putative regulator. | ATPase involved in plasmid partitioning Soj. | 0.971 |
Rmet_2293 | Rmet_2288 | Rmet_2293 | Rmet_2288 | Putative regulator. | Conserved hypothetical protein. | 0.478 |
Rmet_2293 | Rmet_2291 | Rmet_2293 | Rmet_2291 | Putative regulator. | Conserved hypothetical protein. | 0.769 |
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