STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_2525AMP-dependent synthetase and ligase. (516 aa)    
Predicted Functional Partners:
Rmet_3215
AMP-dependant long-chain-fatty-acid-CoA ligase.
  
 
 
0.849
fadD-2
acyl-CoA synthetase (long-chain-fatty-acid-CoA ligase).
  
 
 
0.846
Rmet_0214
long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase).
 
 
0.830
Rmet_1136
Major facilitator superfamily (MFS_1) transporter and phospholipid/glycerol acyltransferase.
  
 
 0.762
ivd
isovaleryl-CoA dehydrogenase (IVDHase).
 
 
 0.659
hoxF
NAD-reducing hydrogenase diaphorase moiety large subunit.
    
 
 0.639
ivd1-2
isovaleryl-CoA dehydrogenase (IVDHase).
  
 
 0.616
fabG-2
3-Oxoacyl-(acyl-carrier-protein) reductase.
 
 
 0.610
Rmet_3467
Putative bifunctional P-450:NADPH-P450 reductase 2 (Includes: Cytochrome P450 102; NADPH--cytochrome P450 reductase).
  
 0.566
Rmet_2529
Acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.563
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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