STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_2571Conserved hypothetical protein; Belongs to the UPF0307 family. (202 aa)    
Predicted Functional Partners:
mogA
Molybdochelatase MogA, involved in Moco biosynthesis.
  
    0.801
rluD
23S rRNA pseudouridine synthase; Belongs to the pseudouridine synthase RluA family.
    
 
 0.683
rpmG
50S ribosomal subunit protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.670
pmbA
Peptidase required for the maturation and secretion of the antibiotic peptide MccB17.
  
    0.625
rpmF
50S ribosomal subunit protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
   0.601
rplD
50S ribosomal subunit protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
  
   0.531
rplV
50S ribosomal subunit protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).
  
   0.528
rluC
23S rRNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
 
 0.510
Rmet_0372
Import inner membrane translocase, subunit Tim44.
  
    0.508
Rmet_3428
Conserved hypothetical protein; predicted periplasmic or secreted lipoprotein.
  
    0.495
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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