STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_26182Fe-2S (Rieske)cluster-containing dioxygenase large terminal subunit. (367 aa)    
Predicted Functional Partners:
betA2
Choline dehydrogenase, a flavoprotein.
    
 0.906
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
   
 
  0.800
Rmet_0543
Putative Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region.
  
  
 0.707
paaJ
Subunit of the phenylacetyl-CoA oxygenase/reductase.
  
  
 0.707
Rmet_6558
Putative hypothetical protein.
  
     0.700
Rmet_2861
Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD- binding region.
 
  
 0.669
Rmet_0724
Conserved hypothetical protein.
  
    0.657
phaP
Phasin (PHA-granule associated protein).
  
     0.627
Rmet_3056
Exoribonuclease II (RNB)-family protein.
  
     0.627
Rmet_1129
Conserved hypothetical protein.
  
     0.623
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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