STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcdHGlutaryl-CoA dehydrogenase. (397 aa)    
Predicted Functional Partners:
paaF
enoyl-CoA hydratase-isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  0.952
Rmet_0080
Enoyl-CoA hydratase (ECH); Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.943
Rmet_0841
Putative enoyl-CoA hydratase/isomerase.
  
 0.943
fadA
acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.933
Rmet_2529
Acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.933
Rmet_3412
Acyl-CoA dehydrogenase.
  
 
  0.928
lpdA
Dihydrolipoamide dehydrogenase.
  
 0.920
ivd1-2
isovaleryl-CoA dehydrogenase (IVDHase).
  
  
 
0.920
ivd
isovaleryl-CoA dehydrogenase (IVDHase).
  
 
 
0.919
Rmet_1814
acyl-CoA dehydrogenase, short-chain specific.
  
 
 
0.918
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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