STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_2712Putative cell surface polysaccharide polymerase/ligase. (413 aa)    
Predicted Functional Partners:
kdtA
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase); Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.943
rfaC-2
ADP-heptose:LPS heptosyl transferase I.
  
 
 0.942
rfaF
ADP-heptose:LPS heptosyltransferase II.
  
 
 0.929
rfaC
Lipopolysaccharide heptosyltransferase I.
  
 
 0.917
Rmet_2720
Putative lipopolysaccharide biosynthesis protein.
  
  
 0.569
Rmet_2723
Polysaccharide biosynthesis protein CapD-type.
  
  
 0.540
Rmet_2718
Putative sugar transferase involved in lipopolysaccharide synthesis.
  
  
 0.523
Rmet_2713
Putative heat shock protein (HslJ-like).
       0.507
Rmet_2725
Transferase (hexapeptide repeat).
  
  
 0.500
cpsG
Phosphomannomutase.
 
  
 0.499
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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