STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsuA16S rRNA pseudouridylate 516 synthase; Belongs to the pseudouridine synthase RsuA family. (238 aa)    
Predicted Functional Partners:
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.742
Rmet_0596
Putative transmembrane transcriptional regulator (Anti-sigma factor).
      
 0.678
cmk
Cytidylate kinase.
 
  
 0.601
Rmet_2743
Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family.
  
    0.591
phr
Deoxyribodipyrimidine photolyase, FAD-binding protein; Belongs to the DNA photolyase family.
  
    0.578
Rmet_2742
Putative Holliday junction resolvase (YqgF-like); Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
    0.574
pyrR
Bifunctional protein: pyrimidine operon regulatory protein/uracil phosphoribosyltransferase (UPRTase).
       0.564
rlmB
23S rRNA methyltransferase.
 
 
 
 0.554
xthA1
Exodeoxyribonuclease III.
  
    0.516
xthA2
Exodeoxyribonuclease III (xth).
  
    0.508
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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