STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mscS1Small-conductance mechano-sensitive channel. (456 aa)    
Predicted Functional Partners:
sun1
tRNA and rRNA cytosine-C5-methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
     0.823
purN
Phosphoribosylglycinamide formyltransferase 1; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
  
    0.786
Rmet_3486
Sodium/hydrogen exchanger family protein.
 
  
 0.616
Rmet_2771
Conserved hypothetical protein DUF490.
 
     0.580
Rmet_3245
Putative transporter, multiple antibiotic resistance (MarC)-related protein.
 
    0.459
scd
Fatty-acid desaturase.
  
    0.455
evgS
Hybrid sensory histidine kinase in two-component regulatory system.
  
  
 0.444
Rmet_2191
Conserved hypothetical protein.
  
     0.435
tnpA-26
Transposase ISRme8.
  
    0.420
Rmet_6564
Conserved hypothetical protein.
       0.417
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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