STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traF-3Plasmid conjugal transfer transmembrane protein. (195 aa)    
Predicted Functional Partners:
Rmet_3021
Conserved hypothetical protein.
 
    0.948
parG-2
Regulator of plasmid copy number (ribbon-helix-helix).
 
    0.943
virD2-3
Relaxase type IV secretory pathway VirD2.
 
  
 0.923
Rmet_3025
Putative transcriptional regulator (DNA binding protein).
 
     0.859
parA-3
ATPase involved in plasmid partitioning ParA.
 
    0.842
Rmet_3026
Conserved hypothetical protein.
 
     0.825
virD2-2
Relaxase type IV secretory pathway VirD2.
 
  
 0.820
virD2
Relaxase type IV secretory pathway VirD2(protein belongs to CMGI-2).
 
  
 0.819
trbC-2
Type IV secretion system protein TrbC; Mating pair formation conjugal transfer TrbC transmembrane protein (module transfer of genomic island CMGI-3).
 
  
 0.814
repA-4
Replication initiator and transcription repressor protein RepA (maintenance module of genomic island family Tn4371).
 
    0.813
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.