STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_3077Outer membrane receptor, TonB-dependent. (753 aa)    
Predicted Functional Partners:
ybiX
PKHD-type hydroxylase.
 
  
 0.957
piuC
PKHD-type hydroxylase (Iron-uptake factor piuC).
 
  
 0.899
btuB
Outer membrane cobalamin receptor, TonB dependent(BtuB).
  
   
 0.549
Rmet_3098
Prolyl 4-hydroxylase.
  
  
 0.514
Rmet_0837
Hydroxamate-type ferrisiderophore receptor.
 
  
0.507
Rmet_1119
FecR-like transmembrane sensor.
 
  
 0.432
Rmet_3075
Conserved hypothetical protein.
       0.424
Rmet_1104
Putative ferric siderophore receptor.
 
  
0.422
bug-28
Extra-cytoplasmic Solute Receptor.
       0.416
Rmet_6575
Hypothetical protein.
       0.416
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.