STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_3153ABC-type branched-chain amino acid transport system, periplasmic component. (398 aa)    
Predicted Functional Partners:
Rmet_3511
ABC-type transporter, ATPase and permease components; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.695
Rmet_1228
Putative branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.671
Rmet_1227
Branched-chain amino acid ABC-type transport system; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.621
Rmet_1860
ABC-type transporter, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.617
Rmet_1861
ABC-type transporter, permease component: HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.608
livM2
Leucine/isoleucine/valine transporter subunit, membrane component of ABC superfamily; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.588
livG7
Leucine/isoleucine/valine ABC-like transporter, ATPase subunit.
 
  
 0.562
Rmet_3152
Hypothetical protein.
       0.562
Rmet_3512
ABC-type transporter, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.553
livH2
Leucine/isoleucine/valine transporter subunit, membrane component of ABC superfamily; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.541
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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