STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nirJ-2Heme d1 biosynthesis protein NirJ. (387 aa)    
Predicted Functional Partners:
nirN
Nitrite reductase (NO-forming).
 
  
 0.969
nirS
Nitrite reductase precursor (Cytochrome cd1) (Cytochrome oxidase) (Hydroxylamine reductase).
 
  
 0.964
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 
 0.913
nirJ
Heme d1 biosynthesis protein NirJ.
  
 
 
0.909
nirG
Transcriptional Regulator, AsnC family.
 
  
 0.878
nirH
Nitrite reductase heme biosynthesis H protein.
 
  
 0.867
nirC
Cytochrome c55X (precursor).
 
  
 0.863
Rmet_3331
Cytochrome c, class I:Cytochrome d1, heme region precursor.
 
  
 0.861
nirF
Cytochrome d1, heme region.
 
  
 0.850
nirE
Uroporphyrin-III C-methyltransferase (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM).
 
  
 0.842
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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