Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Rmet_0587 | Rmet_1740 | Excisionase/Xis, DNA-binding protein. | Putative membrane protein. | 0.770 |
Rmet_0587 | Rmet_1908 | Excisionase/Xis, DNA-binding protein. | Conserved hypothetical protein. | 0.683 |
Rmet_0587 | Rmet_1952 | Excisionase/Xis, DNA-binding protein. | GCN5-related N-acetyltransferase. | 0.684 |
Rmet_0587 | Rmet_2594 | Excisionase/Xis, DNA-binding protein. | Conserved hypothetical protein (secreted). | 0.774 |
Rmet_0587 | Rmet_3196 | Excisionase/Xis, DNA-binding protein. | Conserved hypothetical protein. | 0.762 |
Rmet_0587 | Rmet_3197 | Excisionase/Xis, DNA-binding protein. | Conserved hypothetical protein. | 0.617 |
Rmet_0587 | Rmet_3344 | Excisionase/Xis, DNA-binding protein. | Conserved hypothetical protein. | 0.741 |
Rmet_0587 | Rmet_3542 | Excisionase/Xis, DNA-binding protein. | Hypothetical protein. | 0.770 |
Rmet_1740 | Rmet_0587 | Putative membrane protein. | Excisionase/Xis, DNA-binding protein. | 0.770 |
Rmet_1740 | Rmet_1908 | Putative membrane protein. | Conserved hypothetical protein. | 0.782 |
Rmet_1740 | Rmet_1952 | Putative membrane protein. | GCN5-related N-acetyltransferase. | 0.752 |
Rmet_1740 | Rmet_2594 | Putative membrane protein. | Conserved hypothetical protein (secreted). | 0.791 |
Rmet_1740 | Rmet_3196 | Putative membrane protein. | Conserved hypothetical protein. | 0.776 |
Rmet_1740 | Rmet_3197 | Putative membrane protein. | Conserved hypothetical protein. | 0.657 |
Rmet_1740 | Rmet_3344 | Putative membrane protein. | Conserved hypothetical protein. | 0.778 |
Rmet_1740 | Rmet_3542 | Putative membrane protein. | Hypothetical protein. | 0.773 |
Rmet_1908 | Rmet_0587 | Conserved hypothetical protein. | Excisionase/Xis, DNA-binding protein. | 0.683 |
Rmet_1908 | Rmet_1740 | Conserved hypothetical protein. | Putative membrane protein. | 0.782 |
Rmet_1908 | Rmet_1952 | Conserved hypothetical protein. | GCN5-related N-acetyltransferase. | 0.561 |
Rmet_1908 | Rmet_2594 | Conserved hypothetical protein. | Conserved hypothetical protein (secreted). | 0.729 |
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