STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_3209Transcriptional regulator, AsnC/Lrp-family. (149 aa)    
Predicted Functional Partners:
Rmet_2647
Transcriptional regulator, AsnC/Lrp-family.
  
    0.773
ybaO
Transcriptional regulator, AsnC-family.
  
     0.766
Rmet_3208
Putative saccharopine dehydrogenase (NADP+,L-glutamate-forming).
 
    0.647
Rmet_3210
Dihydrodipicolinate reductase; Belongs to the DapB family.
  
    0.565
Rmet_3207
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.545
gltB
Glutamate synthase, large subunit.
     
 0.441
putA
Fused DNA-binding transcriptional regulator; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.428
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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