STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_3256VacJ-like lipoprotein. (266 aa)    
Predicted Functional Partners:
yrbD
Toluene transporter subunit: membrane component of ABC superfamily.
 
  
 0.947
ttg2D
ABC-type transporter, auxilary periplasmic component involved in toluene tolerance.
 
 
 
 0.830
yrbE
Toluene transporter subunit: membrane component of ABC superfamily.
 
  
 0.812
yrbF
Toluene transporter subunit: ATP-binding component of ABC superfamily.
 
   
 0.768
Rmet_3254
Sulfate transporter/antisigma-factor antagonist STAS.
  
  
 0.505
Rmet_3234
Outer membrane protein (porin).
   
 
 0.494
comL
DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.479
Rmet_0880
Putative outer membrane protein (porin).
  
 
 0.441
Rmet_1628
Putative transmembrane outer membrane porin signal peptide protein.
  
 
 0.441
Rmet_1907
Outer membrane protein (porin).
  
 
 0.441
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.