STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_3331Cytochrome c, class I:Cytochrome d1, heme region precursor. (519 aa)    
Predicted Functional Partners:
norB
Nitric oxide reductase large subunit.
 
 
 0.947
nirC
Cytochrome c55X (precursor).
 
 
 0.926
coxB
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.906
nirG
Transcriptional Regulator, AsnC family.
 
  
 0.899
nirN
Nitrite reductase (NO-forming).
 
 
0.897
nirH
Nitrite reductase heme biosynthesis H protein.
 
  
 0.897
Rmet_2155
Cytochrome c family protein.
  
 
 0.880
nirJ-2
Heme d1 biosynthesis protein NirJ.
 
  
 0.861
nirJ
Heme d1 biosynthesis protein NirJ.
 
  
 0.859
Rmet_3330
Cytochrome c, class I precursor (c553-like).
 
  
 0.817
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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