STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_3375Transcriptional regulator, TetR-family. (206 aa)    
Predicted Functional Partners:
paaJ
Subunit of the phenylacetyl-CoA oxygenase/reductase.
 
   
 0.729
paaC
Putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation.
 
    0.714
paaD
Putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation.
 
    0.705
Rmet_0339
Monooxygenase, FAD-binding:FAD dependent oxidoreductase.
  
   
 0.677
Rmet_0340
Conserved hypothetical protein.
  
     0.665
Rmet_0338
Beta-lactamase-like protein.
  
     0.659
paaA
Putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation.
 
    0.642
paaI
Phenylacetate pathway hotdog-fold thioesterase.
 
    0.634
paaB
Putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation.
 
     0.614
Rmet_3374
Conserved hypothetical protein.
  
    0.580
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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