STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_3401Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B (catalytic subunit). (296 aa)    
Predicted Functional Partners:
Rmet_0798
Putative Pirin-related protein; Belongs to the pirin family.
 
  
 0.672
Rmet_0273
Conserved hypothetical protein; Putative pirin-related protein; Belongs to the pirin family.
 
  
 0.640
Rmet_2579
Conserved hypothetical protein; Belongs to the pirin family.
 
  
 0.628
Rmet_3402
Conserved hypothetical protein.
  
    0.569
proP
Proline/glycine betaine transporter: Permease of the major facilitator superfamily (MFS); MFS transporter, MHS family.
       0.498
Rmet_6594
Hypothetical protein.
       0.498
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.459
xylJ
2-hydroxypent-2,4-dienoate hydratase (protein belongs to CMGI-2).
  
  
 0.425
dmpH
4-oxalocrotonate decarboxylase (protein belongs to CMGI-2).
  
  
 0.423
tag
3-methyl-adenine DNA glycosylase I, constitutive.
  
    0.405
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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