STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proPProline/glycine betaine transporter: Permease of the major facilitator superfamily (MFS); MFS transporter, MHS family. (461 aa)    
Predicted Functional Partners:
Rmet_6594
Hypothetical protein.
       0.773
Rmet_3402
Conserved hypothetical protein.
  
    0.672
oprB
Carbohydrate-selective porin.
      
 0.671
tag
3-methyl-adenine DNA glycosylase I, constitutive.
       0.598
Rmet_3401
Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B (catalytic subunit).
       0.498
rpmE2
50S ribosomal protein L31 type B.
   
    0.479
Rmet_0541
Major facilitator superfamily (MFS_1) transporter.
  
   
 0.432
Rmet_3405
Transporter, LysE-family (amino acid efflux).
  
    0.419
Rmet_6595
Hypothetical protein.
       0.418
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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