STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_3407Glycosyl transferase, family 2-protein. (380 aa)    
Predicted Functional Partners:
Rmet_3408
Radical SAM.
 
  
 0.956
Rmet_3409
Conserved hypothetical protein.
 
  
 0.956
Rmet_3410
Conserved hypothetical protein.
 
    0.945
bcsB
Cellulose synthase, cyclic di-GMP binding subunit; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
 
 0.716
Rmet_1805
Conserved hypothetical protein.
 
    0.666
Rmet_0591
Putative signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
  
 0.615
Rmet_6547
Putative sensory box protein/GGDEF family protein.
  
  
 0.583
Rmet_6548
Putative sensory box protein/GGDEF family protein.
  
  
 0.583
Rmet_0882
Predicted xylanase/chitin deacetylase.
  
  
 0.503
Rmet_2067
Polysaccharide deacetylase.
  
  
 0.503
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.