STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_3408Radical SAM. (473 aa)    
Predicted Functional Partners:
Rmet_3409
Conserved hypothetical protein.
 
  
 0.962
Rmet_3407
Glycosyl transferase, family 2-protein.
 
  
 0.956
Rmet_3410
Conserved hypothetical protein.
 
    0.950
Rmet_1805
Conserved hypothetical protein.
 
    0.721
Rmet_1812
Dioxygenase, iron-sulfur subunit.
  
  
 0.528
Rmet_0550
Conserved hypothetical protein.
   
    0.521
Rmet_1707
Conserved hypothetical protein.
   
    0.518
Rmet_0152
Conserved hypothetical protein.
   
    0.517
Rmet_1425
Conserved hypothetical protein.
 
    0.478
Rmet_1653
Putative membrane associated dehydrogenase (flavoprotein).
 
  
 0.449
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.