STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_3416Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family. (320 aa)    
Predicted Functional Partners:
ptxR
Transcriptional regulator, LysR family, acts on the phosphonate ptx genes.
  
    0.771
yeiE
Putative DNA-binding transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.765
Rmet_3570
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.757
Rmet_3509
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.730
Rmet_0510
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.695
Rmet_1175
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.680
Rmet_0199
Putative DNA-binding transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.614
Rmet_1774
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.597
Rmet_0397
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
    0.555
bug-34
Extra-cytoplasmic Solute Receptor protein.
  
    0.500
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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