STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_3428Conserved hypothetical protein; predicted periplasmic or secreted lipoprotein. (284 aa)    
Predicted Functional Partners:
Rmet_0093
Conserved hypothetical protein (membrane).
  
  
 0.805
soxF
Probable sulfide dehydrogenase flavocytochrome c oxidoreductase protein.
  
    0.777
Rmet_3427
Cytochrome subunit of sulfide dehydrogenase, Flavocytochrome c cytochrome subunit, putative soxE-like protein.
  
    0.777
yraO
DnaA initiator-associating factor for replication initiation; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
    0.666
sdhD
Succinate dehydrogenase, membrane subunit, binds cytochrome b556.
  
    0.583
sdhC
Succinate dehydrogenase, membrane subunit, binds cytochrome b556.
  
    0.540
Rmet_3430
Conserved hypothetical protein; predicted endonuclease distantly to archaeal holliday junction resolvase; Belongs to the UPF0102 family.
  
  
 0.515
comL
DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.495
Rmet_2571
Conserved hypothetical protein; Belongs to the UPF0307 family.
  
    0.495
eamA
Cysteine and O-acetyl-L-serine efflux system.
  
    0.479
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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