STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_3473Cytochrome c family protein. (294 aa)    
Predicted Functional Partners:
Rmet_3284
Cytochrome c4.
 
  
 0.737
petC
Cytochrome c1 precursor (transmembrane protein).
 
  
 0.729
Rmet_0907
Putative conserved hypothetical protein with membrane spanning domain, RDD family.
  
     0.664
Rmet_1129
Conserved hypothetical protein.
  
     0.647
Rmet_0268
Conserved hypothetical protein; putative transmembrane protein.
 
    0.609
Rmet_0987
Cytochrome c, class IC 1.
 
  
 0.591
Rmet_0941
Conserved hypothetical protein.
  
    0.563
Rmet_2377
Putative cytochrome c4.
 
  
 0.551
Rmet_0988
Cytochrome c553.
 
  
 0.549
coxB
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
  
 0.538
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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