STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompW1Porin, OmpW family. (241 aa)    
Predicted Functional Partners:
hemN-2
Coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.680
ccoO
Cbb3-type cytochrome oxidase, monoheme subunit II.
 
    0.593
ccoO-2
Cytochrome C oxidase, mono-heme subunit.
 
    0.588
Rmet_1233
Hypothetical protein.
 
     0.523
rdxB
4Fe-4S ferredoxin, iron-sulfur binding protein.
 
    0.506
Rmet_0901
Transcriptional regulator, TetR/AcrR-family.
  
    0.495
ccoN
Cbb3-type cytochrome oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.484
ccoN-2
Cytochrome-c oxidase.
 
  
 0.480
Rmet_2491
Conserved hypothetical protein.
  
     0.456
Rmet_0919
Lipoprotein.
  
   
 0.438
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.