Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rmet_3530Conserved hypothetical protein. (228 aa)    
Predicted Functional Partners:
Rmet_3531
Large extracellular alpha-helicalprotein.
       0.771
pbpC
Fused transglycosylase; transpeptidase; penicillin binding protein.
  
    0.652
Rmet_2023
Sterol desaturase family protein.
 
    0.555
Rmet_0145
Conserved hypothetical protein.
  
     0.546
Rmet_3532
Transcriptional regulator, AsnC/Lrp family.
  
    0.536
Rmet_3475
Putative ABC-type branched-chain amino acid transport system, periplasmic component.
  
    0.513
Rmet_1005
Conserved hypothetical protein.
  
     0.508
Rmet_3528
Aldo/keto reductase.
  
    0.503
Rmet_3527
Ornithine cyclodeaminase.
 
     0.461
Rmet_1763
Conserved hypothetical protein.
  
     0.424
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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