STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_3530Conserved hypothetical protein. (228 aa)    
Predicted Functional Partners:
Rmet_3531
Large extracellular alpha-helicalprotein.
       0.771
pbpC
Fused transglycosylase; transpeptidase; penicillin binding protein.
  
    0.654
Rmet_2023
Sterol desaturase family protein.
 
    0.557
Rmet_0145
Conserved hypothetical protein.
  
     0.546
Rmet_3532
Transcriptional regulator, AsnC/Lrp family.
  
    0.538
Rmet_3475
Putative ABC-type branched-chain amino acid transport system, periplasmic component.
  
    0.515
Rmet_1005
Conserved hypothetical protein.
  
     0.508
Rmet_3528
Aldo/keto reductase.
  
    0.502
Rmet_3527
Ornithine cyclodeaminase.
 
    0.461
Rmet_1763
Conserved hypothetical protein.
  
    0.428
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.