STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_6446Conserved hypothetical protein. (67 aa)    
Predicted Functional Partners:
Rmet_1266
Putative RNA Modifying Enzyme.
       0.790
Rmet_1265
Conserved hypothetical protein; Belongs to the LOG family.
       0.776
ybhR
Permease component of ABC superfamily (CMGI-2).
 
     0.768
ybhS
Putative transporter subunit: permease component of ABC superfamily.
 
     0.766
oprN
Outer membrane efflux family protein precursor.
       0.723
tnpB-3
IstB-like ATP binding protein ISRme20.
       0.464
tnpA-6
Transposase (DDE site) ISRme20.
       0.464
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.