Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rmet_1257 | Rmet_1482 | Rmet_1257 | Rmet_1482 | Conserved hypothetical protein. | Lipoprotein. | 0.589 |
Rmet_1257 | Rmet_1483 | Rmet_1257 | Rmet_1483 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.770 |
Rmet_1257 | Rmet_1484 | Rmet_1257 | Rmet_1484 | Conserved hypothetical protein. | Putative transcriptional regulator (DNA binding protein). | 0.778 |
Rmet_1257 | Rmet_3026 | Rmet_1257 | Rmet_3026 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.767 |
Rmet_1257 | parA-2 | Rmet_1257 | Rmet_1486 | Conserved hypothetical protein. | ATPase involved in plasmid partitioning ParA. | 0.625 |
Rmet_1257 | parG-3 | Rmet_1257 | Rmet_6451 | Conserved hypothetical protein. | Regulator of plasmid copy number (ribbon-helix-helix). | 0.779 |
Rmet_1257 | repA-2 | Rmet_1257 | Rmet_1485 | Conserved hypothetical protein. | Replication initiation protein CMGI-3 (GI family Tn4371). | 0.777 |
Rmet_1257 | traF-2 | Rmet_1257 | Rmet_1488 | Conserved hypothetical protein. | Plasmid conjugal transfer transmembrane protein. | 0.781 |
Rmet_1257 | virD2-2 | Rmet_1257 | Rmet_1489 | Conserved hypothetical protein. | Relaxase type IV secretory pathway VirD2. | 0.781 |
Rmet_1482 | Rmet_1257 | Rmet_1482 | Rmet_1257 | Lipoprotein. | Conserved hypothetical protein. | 0.589 |
Rmet_1482 | Rmet_1483 | Rmet_1482 | Rmet_1483 | Lipoprotein. | Conserved hypothetical protein. | 0.858 |
Rmet_1482 | Rmet_1484 | Rmet_1482 | Rmet_1484 | Lipoprotein. | Putative transcriptional regulator (DNA binding protein). | 0.797 |
Rmet_1482 | Rmet_1487 | Rmet_1482 | Rmet_1487 | Lipoprotein. | Conserved hypothetical protein. | 0.596 |
Rmet_1482 | Rmet_3026 | Rmet_1482 | Rmet_3026 | Lipoprotein. | Conserved hypothetical protein. | 0.774 |
Rmet_1482 | parA-2 | Rmet_1482 | Rmet_1486 | Lipoprotein. | ATPase involved in plasmid partitioning ParA. | 0.535 |
Rmet_1482 | parG-3 | Rmet_1482 | Rmet_6451 | Lipoprotein. | Regulator of plasmid copy number (ribbon-helix-helix). | 0.808 |
Rmet_1482 | repA-2 | Rmet_1482 | Rmet_1485 | Lipoprotein. | Replication initiation protein CMGI-3 (GI family Tn4371). | 0.491 |
Rmet_1482 | traF-2 | Rmet_1482 | Rmet_1488 | Lipoprotein. | Plasmid conjugal transfer transmembrane protein. | 0.745 |
Rmet_1482 | virD2-2 | Rmet_1482 | Rmet_1489 | Lipoprotein. | Relaxase type IV secretory pathway VirD2. | 0.734 |
Rmet_1483 | Rmet_1257 | Rmet_1483 | Rmet_1257 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.770 |
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