STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_A0100Putative TPR domain protein. (790 aa)    
Predicted Functional Partners:
Bxe_B0911
TPR domain protein.
0.829
Bxe_A0099
Putative transferase; Belongs to the DegT/DnrJ/EryC1 family.
       0.781
Bxe_A0097
Putative acyl carrier protein.
       0.773
Bxe_A0098
3-oxoacyl-(acyl-carrier protein) synthase.
       0.773
Bxe_A0095
Putative short chain dehydrogenase.
   
   0.764
Bxe_A0094
Putative acetyltransferase.
       0.762
Bxe_A0093
Putative benzoate 1,2-dioxygenase alpha subunit.
       0.757
Bxe_A0096
3-oxoacyl-(acyl-carrier protein) synthase.
       0.757
Bxe_B2618
Conserved hypothetical protein; Tetratricopeptide repeat present.
  
  0.743
Bxe_A4384
Conserved hypothetical protein.
     0.706
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.