STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_A1099Major facilitator superfamily, aromatic acid/H+ symporter. (461 aa)    
Predicted Functional Partners:
Bxe_A1098
Conserved hypothetical protein; YCII-related domain.
       0.588
benA
Benzoate 1,2-dioxygenase, alpha subunit; Citation: Annu Rev Microbiol. 1996;50:553-90.
 
  
  0.537
catA
Catechol 1,2-dioxygenase (CatA); Citation: Annu Rev Microbiol. 50:553-90 (1996).Gene 226 (2), 189-198 (1999).
 
   
 0.533
benB
Benzoate 1,2-dioxygenase, beta subunit; Citation: Annu Rev Microbiol. 1996;50:553-90.
 
     0.500
Bxe_A1102
Ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain.
 
  
  0.468
Bxe_A0977
Chorismate mutase.
    
 0.458
benD
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase; Citation: Annu Rev Microbiol. 1996;50:553-90; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.457
Bxe_A1100
Vanillate O-demethylase reductase subunit, VanB.
       0.441
Bxe_A3959
Para-aminobenzoate synthase, component I.
   
 
 0.438
catB
Muconate cycloisomerase; Citation: Annu Rev Microbiol. 1996;50:553-90. Gene226 (2), 189-198 (1999); Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.433
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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