STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_A1111Putative fumarylacetoacetate (FAA) hydrolase. (314 aa)    
Predicted Functional Partners:
Bxe_A1113
Putative dioxygenase.
       0.757
Bxe_A1112
Conserved hypothetical protein; YCII-related domain present.
       0.746
Bxe_A1114
Conserved hypothetical protein.
       0.721
Bxe_A1115
Putative dehydrogenase/oxidoreductase protein.
  
    0.697
Bxe_A1110
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; TC 3.A.1.4.-.
       0.668
Bxe_B0283
Putative fumarate reductase flavoprotein subunit.
  
 
  0.645
Bxe_B2502
Conserved hypothetical protein.
  
 
  0.645
Bxe_B1003
Putative succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
 
  0.635
Bxe_B2032
5-carboxymethyl-2-hydroxymuconate delta isomerase; Homoprotocatechuate pathway; Citation: J. Bacteriol. 178 (1), 111-120 (1996).
  
 
 0.588
Bxe_B2028
5-carboxy-2-oxohept-3-enedioate decarboxylase HpaG1 subunit; Homoprotocatechuate pathway; Citation: Biochemistry 41 (9), 2982-2989 (2002).
  
  
 
0.559
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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