STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_A1330Transcriptional regulator, RpiR family. (278 aa)    
Predicted Functional Partners:
Bxe_A1331
Myo-inositol 2-dehydrogenase.
 
     0.933
Bxe_A1332
Putative oxidoreductase.
 
     0.916
Bxe_A1326
5-dehydro-2-deoxygluconokinase.
 
  
 0.877
Bxe_A1325
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
 
   
 0.845
Bxe_A1323
5-deoxyglucuronate isomerase.
 
   
 0.832
Bxe_A1324
2-keto-myo-inositol dehydratase.
 
   
 0.825
Bxe_A1329
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; TC 3.A.1.2.-.
 
  
 0.824
Bxe_A4152
TC 4.A.1.1.2; TC 4.A.1.1.2.
  
 
 0.750
Bxe_A1328
Monosaccharide ABC transporter membrane protein, CUT2 family; TC 3.A.1.2.-; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.712
Bxe_A1327
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; TC 3.A.1.2.-.
 
     0.680
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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