STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_A1401Putative 2-keto-gluconate dehydrogenase. (528 aa)    
Predicted Functional Partners:
Bxe_A4075
Putative cytochrome c precursor.
  
 
 0.952
Bxe_C1257
Hypothetical protein.
    
 0.921
Bxe_A1400
Conserved hypothetical protein.
 
     0.889
Bxe_B2859
Hypothetical protein.
   
   0.819
Bxe_A0566
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.809
pgi
Glucose-6-phosphate isomerase.
   
 
  0.805
glk
Glucokinase; In the N-terminal section; belongs to the bacterial glucokinase family.
     
 0.802
Bxe_B0611
Gluconolactonase.
    
 0.802
Bxe_A0690
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.801
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
     
 0.800
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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