STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_A1406Transcriptional regulator, GntR family. (463 aa)    
Predicted Functional Partners:
Bxe_A1407
Conserved hypothetical protein.
 
     0.823
Bxe_A1410
Conserved hypothetical protein.
 
     0.823
Bxe_A1409
Conserved hypothetical protein; Radical SAM domain present.
 
     0.817
Bxe_A1413
Conserved hypothetical protein.
 
     0.812
Bxe_A1411
Putative thiamine-monophosphate kinase.
 
     0.783
Bxe_A1408
Putative nitrilase.
 
     0.777
Bxe_A1414
Conserved hypothetical protein; Weak similarity to monoxygenases.
 
     0.734
Bxe_A1412
Putative glycosyl transferases group 1.
 
     0.666
Bxe_A0977
Chorismate mutase.
    
 0.605
boxA-2
benzoyl-CoA oxygenase, component A; Citation: J. Bacteriol. 2002 Nov;184(22):6301- 15.Mol. Microbiol. 2004 Oct;54(1):223-38. Appl EnvironMicrobiol. 2004 Aug;70(8):4961-70.
    
   0.578
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.