STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_A1408Putative nitrilase. (348 aa)    
Predicted Functional Partners:
Bxe_A1410
Conserved hypothetical protein.
 
  
  0.961
Bxe_A1413
Conserved hypothetical protein.
 
 
 0.960
Bxe_A1411
Putative thiamine-monophosphate kinase.
 
   
 0.955
Bxe_A1409
Conserved hypothetical protein; Radical SAM domain present.
 
     0.952
Bxe_A1412
Putative glycosyl transferases group 1.
 
    0.947
Bxe_A1414
Conserved hypothetical protein; Weak similarity to monoxygenases.
 
 
 0.946
Bxe_A1407
Conserved hypothetical protein.
 
   
 0.942
Bxe_A0596
Glutamate dehydrogenase (NADP); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.859
Bxe_A0365
Glutamate synthase (NADH) large subunit.
    
 0.851
Bxe_A0815
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
    
 0.826
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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