STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_A1914ABC multidrug efflux pump, membrane fusion protein, HlyD subfamily. (337 aa)    
Predicted Functional Partners:
Bxe_A1910
ABC multidrug efflux pump, inner membrane subunit.
  
 0.963
Bxe_A1911
ABC multidrug efflux pump, inner membrane subunit.
  
 0.962
Bxe_A1913
ABC multidrug efflux pump, ATPase subunit.
  
 0.957
Bxe_A1912
ABC multidrug efflux pump, ATPase subunit.
  
 0.955
Bxe_B0475
Bacteriocin-processing peptidase, Cysteine peptidase, MEROPS family C39.
  
 0.854
Bxe_B2341
ABC multidrug efflux pump, inner membrane subunit.
  
 0.803
Bxe_B0732
ABC bacteriocin/lantibiotic exporter, fused ATPase inner membrane and peptidase subunits.
  
 0.801
Bxe_C1143
Colicin V processing peptidase, Cysteine peptidase, MEROPS family C39.
  
 0.801
Bxe_B1229
RND efflux pump, membrane fusion protein, CzcB subfamily; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.711
Bxe_C1145
ABC antibiotic efflux pump, outer membrane protein, TolC family.
 
 0.690
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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