STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_A2181Putative transmembrane protein DUF1109. (213 aa)    
Predicted Functional Partners:
Bxe_A2180
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.957
Bxe_B0584
Putative membrane protein.
 
   
 0.682
Bxe_B0588
Conserved hypothetical protein.
 
   
 0.637
Bxe_A2178
Putative transmembrane hydrogenase cytochrome B- type subunit.
 
     0.620
Bxe_A2177
Putative oxidoreductase, molybdopterin binding protein.
 
   
 0.550
Bxe_A2179
Conserved hypothetical protein.
     
 0.493
Bxe_A2182
Hypothetical protein.
       0.490
Bxe_A3873
Hypothetical protein.
  
     0.480
Bxe_B0820
Hypothetical protein.
  
     0.478
Bxe_A2783
Putative transmembrane transcriptional regulator(anti-sigma factor) protein, PrtR; Citation: Matsui,H., Sano,Y., Ishihara,H. andShinomiya,T. Regulation of pyocin genes in Pseudomonasaeruginosa by positive (prtN) and negative (prtR)regulatory genes. J. Bacteriol. 175 (5), 1257-1263 (1993).
  
     0.436
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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