STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_A3173Conserved hypothetical protein. (237 aa)    
Predicted Functional Partners:
metN1
ABC methionine transporter, ATPase subunit; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
   
   0.917
metN2
ABC methionine transporter, ATPase subunit; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
   
   0.917
Bxe_B0324
Putative hydrogenase/oxidoreductase subunit.
    
   0.902
Bxe_C0174
Putative hydrogenase/oxidoreductase subunit.
    
   0.902
Bxe_A2510
Signal peptidase I, Serine peptidase, MEROPS family S26A; Belongs to the peptidase S26 family.
   
    0.888
Bxe_A0715
ABC Mn2+/Zn2+ transporter, inner membrane subunit.
  
 
 0.817
Bxe_A0717
ABC Mn2+/Zn2+ transporter, periplasmic ligand binding protein.
  
 
 0.790
Bxe_A0716
ABC Mn2+/Zn2+ transporter, ATPase subunit.
  
 
 0.760
Bxe_B0140
Conserved hypothetical protein.
   
   0.713
fur
Ferric uptake regulator (FUR) family; Belongs to the Fur family.
  
  
 0.655
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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