STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_A3550Transcriptional regulator, TetR family; Citation: J. Bacteriol. 178 (5), 1351-1362 (1996); p-cymene pathway. (209 aa)    
Predicted Functional Partners:
Bxe_A3549
HOMODA hydrolase (CmtE); P-cumate pathway; Citation: J. Bacteriol. 178 (5), 1351-1362 (1996).
 
   
 0.690
Bxe_A3554
2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC); P-cumate pathway; Citation: J. Bacteriol. 178 (5), 1351-1362 (1996).
 
   
 0.667
Bxe_A3551
HCOMODA decarboxylase (CmtD); P-cumate pathway; Citation: J. Bacteriol. 178 (5), 1351-1362 (1996).
 
   
 0.643
Bxe_A3555
P-cumate dioxygenase small subunit (CmtAc); P-cumate pathway; Citation: J. Bacteriol. 178 (5), 1351-1362 (1996).
 
   
 0.606
Bxe_A3553
2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase(CmtB); P-cumate pathway; Citation: J. Bacteriol. 178 (5), 1351-1362 (1996).
 
   
 0.604
Bxe_A3548
2-hydroxypenta-2,4-dienoate hydratase (CmtF); P-cumate pathway; Citation: J. Bacteriol. 178 (5), 1351-1362 (1996).
     
 0.582
Bxe_A3556
P-cumate dioxygenase large subunit (CmtAb); P-cumate pathway; Citation: J. Bacteriol. 178 (5), 1351-1362 (1996).
    
 0.570
Bxe_A3552
P-cumate dioxygenase ferredoxin subunit (CmtAd); P-cumate pathway; Citation: J. Bacteriol. 178 (5), 1351-1362 (1996).
     
 0.544
Bxe_A3561
P-cymene monooxygenase, hydroxylase subunit(CymAa); P-cymene pathway; Citation: J. Bacteriol. 179 (10), 3171-3180(1997).
  
   
 0.526
Bxe_B1788
Transcriptional regulator, MerR family.
  
     0.526
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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