STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_A3786Putative short-chain dehydrogenase/reductase SDR. (246 aa)    
Predicted Functional Partners:
Bxe_A3784
Putative transmembrane potein; Belongs to the UbiA prenyltransferase family.
 
   
 0.955
Bxe_A3785
Hypothetical transmembrane protein.
 
   
 0.951
Bxe_A3787
Putative transmembrane protein.
 
     0.886
Bxe_A3789
Conserved hypothetical protein.
 
     0.862
Bxe_A3790
Conserved hypothetical transmembrane protein.
 
     0.857
Bxe_A3788
Putative transmembrane oxidoreductase protein.
 
 
 0.803
Bxe_A0365
Glutamate synthase (NADH) large subunit.
    
  0.788
Bxe_B0525
Non-ribosomal peptide synthase.
 
  
 0.577
Bxe_A0931
Putative AMP-dependent synthetase and ligase.
     
 0.519
Bxe_A3782
Putative epimerase/dehydratase.
   
 0.506
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.