STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_A3971Putative carbon-nitrogen hydrolase protein. (274 aa)    
Predicted Functional Partners:
Bxe_A0365
Glutamate synthase (NADH) large subunit.
 
  
 0.876
Bxe_A0049
Delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
  0.817
Bxe_B1384
Urea amidolyase-related protein.
   
 0.674
Bxe_A0511
Putative lipoprotein.
   
    0.667
Bxe_A3970
Putative membrane protein.
 
     0.661
Bxe_B1598
Sarcosine oxidase, alpha subunit, heterotetrameric; Belongs to the GcvT family.
   
 
 0.661
Bxe_A1429
Dihydropyrimidine dehydrogenase (NADP+) / dihydroorotate oxidase B, catalytic subunit.
  
 0.657
Bxe_A3972
Microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62.
 
    0.654
Bxe_C1311
Putative carbon-nitrogen hydrolase.
  
  
0.653
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
 
 
 0.651
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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