STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B0310Sigma54 specific transcriptional regulator with GAF sensor, Fis family. (654 aa)    
Predicted Functional Partners:
Bxe_B2559
Homodimeric dihydroxyacetone kinase.
   
 
 0.943
Bxe_A4122
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.804
Bxe_B1172
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.804
Bxe_B0311
Hypothetical protein.
       0.664
Bxe_B0312
Putative acetoin catabolism protein.
 
   
 0.614
Bxe_B0309
GAF modulated sigma54 specific transcriptional regulator, Fis family.
 
    
0.518
Bxe_B0315
Putative acetoin dehydrogenase.
 
   
 0.474
Bxe_B0313
Pyruvate dehydrogenase (lipoamide).
     
 0.470
Bxe_B0314
Acetoin dehydrogenase, beta subunit.
     
 0.400
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.