STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B0439TRAP dicarboxylate transporter, fused DctM (12TM) and DctQ (4TM) subunits. (628 aa)    
Predicted Functional Partners:
Bxe_B0438
TRAP dicarboxylate transporter, periplasmic ligand binding subunit DctP.
  
 0.989
Bxe_B1798
TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.973
Bxe_A1475
TRAP dicarboxylate transporter, periplasmic ligand binding subunit DctP.
 
  
 0.972
Bxe_B1797
TRAP dicarboxylate transporter, DctQ (4TM)subunit.
 
 0.934
Bxe_B1796
TRAP C4-dicarboxylate transporter, DctM subunit.
 
0.928
Bxe_A1477
TRAP C4-dicarboxylate transporter, DctM (12TM)subunit.
 
0.926
Bxe_A1476
Putative TRAP dicarboxylate transporter, DctQ subunit.
  
 0.890
Bxe_C0325
Putative carbamoyl-phosphate synthase/carboxyltransferase.
    
 0.698
Bxe_B0442
Conserved hypothetical protein.
 
     0.677
Bxe_B1384
Urea amidolyase-related protein.
    
 0.662
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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