STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B0539D-glucarate dehydratase. (449 aa)    
Predicted Functional Partners:
Bxe_B1802
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.987
Bxe_A4404
2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.973
Bxe_B1801
Galactarate dehydratase.
 
 
 0.954
Bxe_B2034
2,4-dihydroxyhept-2-enedioate aldolase; Homoprotocatechuate pathway; Citation: Gene 166 (1), 73-76 (1995); Belongs to the HpcH/HpaI aldolase family.
 
 
 0.951
Bxe_A4448
Altronate dehydratase.
 
 
 0.876
Bxe_B0538
Hypothetical protein.
       0.714
Bxe_B0135
Putative mandelate racemase (MdlA); Mandelate pathway; Citation: Biochemistry 29 (42), 9856-9862 (1990); Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
  0.685
Bxe_C0507
Putative HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.683
Bxe_A3357
Putative mandelate racemase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 0.681
rhmD
Putative mandelate racemase/muconate lactonizing enzyme; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
 
  
 0.659
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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