Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Bxe_A3502 | Bxe_B0897 | Putative outer membrane cobalamin receptor, TonB dependent. | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | 0.865 |
Bxe_A3502 | Bxe_B0899 | Putative outer membrane cobalamin receptor, TonB dependent. | Outer membrane transport energization protein ExbB; TC 2.C.1.1.1. | 0.405 |
Bxe_A3502 | Bxe_B0900 | Putative outer membrane cobalamin receptor, TonB dependent. | TonB-dependent siderophore receptor. | 0.429 |
Bxe_A3502 | Bxe_B0909 | Putative outer membrane cobalamin receptor, TonB dependent. | TonB-dependent siderophore receptor. | 0.569 |
Bxe_A3502 | Bxe_B2473 | Putative outer membrane cobalamin receptor, TonB dependent. | Putative TonB-dependent siderophore receptor. | 0.617 |
Bxe_A3502 | Bxe_C0041 | Putative outer membrane cobalamin receptor, TonB dependent. | Putative TonB-dependent siderophore receptor. | 0.523 |
Bxe_A3502 | Bxe_C0231 | Putative outer membrane cobalamin receptor, TonB dependent. | TonB-dependent siderophore receptor. | 0.567 |
Bxe_B0897 | Bxe_A3502 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | Putative outer membrane cobalamin receptor, TonB dependent. | 0.865 |
Bxe_B0897 | Bxe_B0898 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | Outer membrane transport energization protein ExbD; TC 2.C.1.1.1. | 0.952 |
Bxe_B0897 | Bxe_B0899 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | Outer membrane transport energization protein ExbB; TC 2.C.1.1.1. | 0.932 |
Bxe_B0897 | Bxe_B0900 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | TonB-dependent siderophore receptor. | 0.895 |
Bxe_B0897 | Bxe_B0909 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | TonB-dependent siderophore receptor. | 0.825 |
Bxe_B0897 | Bxe_B2473 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | Putative TonB-dependent siderophore receptor. | 0.898 |
Bxe_B0897 | Bxe_B2477 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | Outer membrane transport energization protein ExbD; TC 2.C.1.1.1. | 0.824 |
Bxe_B0897 | Bxe_C0041 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | Putative TonB-dependent siderophore receptor. | 0.866 |
Bxe_B0897 | Bxe_C0225 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | Outer membrane transport energization protein ExbD; TC 2.C.1.1.1. | 0.824 |
Bxe_B0897 | Bxe_C0231 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | TonB-dependent siderophore receptor. | 0.866 |
Bxe_B0898 | Bxe_B0897 | Outer membrane transport energization protein ExbD; TC 2.C.1.1.1. | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | 0.952 |
Bxe_B0898 | Bxe_B0899 | Outer membrane transport energization protein ExbD; TC 2.C.1.1.1. | Outer membrane transport energization protein ExbB; TC 2.C.1.1.1. | 0.985 |
Bxe_B0898 | Bxe_B0900 | Outer membrane transport energization protein ExbD; TC 2.C.1.1.1. | TonB-dependent siderophore receptor. | 0.710 |
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