STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B0973Conserved hypothetical protein. (108 aa)    
Predicted Functional Partners:
Bxe_B0974
3-hydroxyisobutyrate dehydrogenase.
       0.757
Bxe_A0442
Hypothetical protein.
  
    0.704
Bxe_A2321
Putative transmembrane protein, AsmA-like protein.
   
    0.665
Bxe_B0975
Putative aldehyde dehydrogenase.
       0.647
Bxe_B0971
Conserved hypothetical protein.
 
     0.635
Bxe_B0972
3-hydroxyisobutyrate dehydrogenase.
       0.570
Bxe_A1942
Conserved hypothetical protein.
   
    0.567
rsgA
Protein of unknown function DUF258; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
  
  
  0.520
Bxe_A3614
Major facilitator superfamily (MFS) transporter.
  
     0.478
Bxe_B1415
Conserved hypothetical protein.
  
     0.478
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.