STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B1139Transcriptional regulator, TetR family. (193 aa)    
Predicted Functional Partners:
Bxe_B1138
Putative dehydrogenase.
 
     0.856
Bxe_B2020
Transcriptional regulator, MarR family.
  
     0.633
Bxe_A2701
Oxidoreductase, short- chain dehydrogenase/reductase.
  
     0.508
Bxe_C0762
Transcriptional regulator, MarR family.
  
     0.503
Bxe_A1771
Putative nucleoside-diphosphate-sugar epimerase.
  
     0.499
Bxe_B1140
Transcriptional regulator, RpiR family.
       0.488
Bxe_B2092
Conserved hypothetical protein.
  
     0.481
Bxe_B0546
Putative epimerase/dehydratase.
  
     0.473
Bxe_A1713
Transcriptional regulator, MarR family.
  
     0.463
Bxe_B1099
Putative epimerase/dehydratase.
  
     0.455
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.