STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B1371Isochorismatase family protein. (230 aa)    
Predicted Functional Partners:
Bxe_B1385
Putative urea amidolyase.
  
  0.986
Bxe_B1373
Isochorismatase family protein.
 
  
 
0.980
Bxe_B1367
Putative amidase.
  
  0.974
Bxe_B1372
Nucleoside ABC transporter ATP-binding protein.
 
     0.900
Bxe_B1374
Conserved hypothetical protein.
 
     0.897
Bxe_B1384
Urea amidolyase-related protein.
    
 0.888
Bxe_B1369
Nucleoside ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.862
Bxe_B1370
Nucleoside ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.850
Bxe_B1368
Nucleoside-binding protein.
 
     0.843
Bxe_A2100
Putative Asp-tRNA Asn/Glu-tRNAGln amidotransferase A subunit; Belongs to the amidase family.
   
  0.820
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.