STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B1530Putative membrane protein. (131 aa)    
Predicted Functional Partners:
Bxe_B1529
Conserved hypothetical protein.
       0.586
Bxe_B1531
Hypothetical protein.
       0.538
Bxe_C0453
Putative type IV secretion system protein VirB8/TraJ.
  
     0.527
Bxe_A2251
Putative phosphate starvation-inducible protein, PsiF; Citation: Metcalf,W.W., Steed,P.M. andWanner,B.L.J. Bacteriol. 172 (6), 3191-3200 (1990).
   
    0.517
Bxe_A2652
Putative type IV secretion system protein VirB8/TraJ.
  
     0.515
Bxe_A1759
Putative type IV secretion system protein VirB8/TraJ.
  
     0.512
Bxe_B1483
Hypothetical protein.
  
     0.463
Bxe_A0273
Outer membrane porin, OmpW family.
  
     0.442
Bxe_A1760
Putative type IV secretion system protein VirB9.
  
     0.439
Bxe_C0454
Putative type IV secretion system protein VirB9.
  
     0.439
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.