STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B1853Nitroreductase family protein. (194 aa)    
Predicted Functional Partners:
Bxe_A3915
Putative short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.919
Bxe_A1380
Putative oxygenase.
  
 
 0.726
Bxe_A4453
Putative flavin-dependent reductase.
  
 
 0.726
Bxe_B2309
4-hydroxyphenylacetate 3-monooxygenase reductase component.
  
 
 0.726
Bxe_C0950
Putative flavoprotein reductase.
  
 
 0.726
Bxe_B2340
ABC multidrug efflux pump, fused duplicated ATPase and inner membrane subunits.
  
  
 0.603
Bxe_A3410
Uroporphyrinogen III synthase HEM4.
  
 
 0.567
Bxe_B1852
DNA-N1-methyladenine dioxygenase.
       0.552
Bxe_A0394
ABC multidrug efflux pump, inner membrane subunit.
  
  
 0.529
Bxe_A1910
ABC multidrug efflux pump, inner membrane subunit.
  
  
 0.529
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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